Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| BLCA | rs60061614 | chr8:50775680 | G/A | 2.43E-5 | 216 | 10.53 | 9.05 | 1.87 | KM Plot |
| BLCA | rs60160189 | chr15:83245053 | T/C | 3.41E-8 | 212 | 9.95 | 8.5 | 1.35 | KM Plot |
| BLCA | rs60311298 | chr8:50706347 | C/T | 0 | 210 | 10.33 | 8.4 | 0.1 | KM Plot |
| BLCA | rs603286 | chr11:65095801 | G/A | 4.43E-5 | 210 | 8.87 | 13.03 | 5.13 | KM Plot |
| BLCA | rs60408076 | chr15:40982547 | C/T | 2.17E-6 | 215 | 10.68 | 6.97 | 6.13 | KM Plot |
| BLCA | rs607118 | chr15:40771960 | C/T | 2.65E-5 | 215 | 11.07 | 6.83 | 5.43 | KM Plot |
| BLCA | rs60914253 | chr14:24428699 | C/T | 2.34E-6 | 211 | 10.33 | 6.82 | 4.07 | KM Plot |
| BLCA | rs611910 | chr11:65049278 | A/G | 0 | 216 | 9.03 | 12.4 | 2.73 | KM Plot |
| BLCA | rs61381741 | chr15:40972552 | C/G | 2.17E-6 | 215 | 10.68 | 6.97 | 6.13 | KM Plot |
| BLCA | rs617031 | chr15:40779845 | C/T | 3.18E-5 | 215 | 10.9 | 6.8 | 5.43 | KM Plot |
| BLCA | rs61933387 | chr12:75929811 | C/T | 4.18E-13 | 206 | 9.03 | 12.3 | 1.65 | KM Plot |
| BLCA | rs620427 | chr11:65094583 | C/A | 0 | 214 | 9.05 | 12.68 | 2.73 | KM Plot |
| BLCA | rs62306008 | chr4:70235606 | C/T | 2.56E-7 | 212 | 8.4 | 13.17 | 1.83 | KM Plot |
| BLCA | rs623187 | chr15:40773187 | C/G | 2.65E-5 | 215 | 11.07 | 6.9 | 3.85 | KM Plot |
| BLCA | rs62334531 | chr4:170551360 | T/G | 2.28E-8 | 215 | 9.25 | 11.9 | 0.57 | KM Plot |